PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_24140V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 648aa    MW: 69266.6 Da    PI: 6.3773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_24140V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-0982106226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C ++++t tC++G +C++ H+
  Pp3c2_24140V3.4.p  82 GQKVCAYYMATRTCSFGVTCRYDHP 106
                        6789********************8 PP
2zf-CCCH39.21.1e-12138162327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c2_24140V3.4.p 138 EPDCAYFMKTGECRYGPQCRFNHPK 162
                        689********************96 PP
3zf-CCCH22.71.8e-07202224527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G+ C+++H++
  Pp3c2_24140V3.4.p 202 NCVFYGKTGSCKHGPACRYNHPE 224
                        79*******************96 PP
4zf-CCCH35.61.5e-11512538127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c2_24140V3.4.p 512 PGEPDCTFYIKTGECSFGATCKFHHPP 538
                        5789*********************97 PP
5zf-CCCH33.19.7e-11568592327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG Ck+G +Ck+ H+p
  Pp3c2_24140V3.4.p 568 EAPCAYYMKTGACKFGQTCKYDHPP 592
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.20280108IPR000571Zinc finger, CCCH-type
SMARTSM003560.01580107IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-782106IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413135163IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5141163IPR000571Zinc finger, CCCH-type
SMARTSM003560.026197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427197225IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4202224IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5511538IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99511539IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8513538IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5515540IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4517537IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812565593IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4565592IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8568592IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5569593IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4570590IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS  60
ADGAAKRLSD GGENGLYPQR PGQKVCAYYM ATRTCSFGVT CRYDHPAWLP PGGIPSWKEV  120
TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH PKEKLEPSNT DDQYSAASSA  180
AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY NHPEIVFPAG GRTGQTLQPQ  240
QAVYVQPPQQ PNSQYQMVQA TPDYSYPATT YQSTTPTYTT APTAYPVATT YSTAAPAYAS  300
PAAPYTGQQV ITEYVYPGGA MMQVYPAGST TQGYPPETPT QSYSQGTPAQ SFPPGTPTQG  360
YSQTRTFSLG TIMQQYTQGT TALGLCQVQS YPSGTTSQTY PPGTKSHPQQ LTYPPAGQQP  420
QCQEDYTYAT QQVSRNGTEY MYSTEQPGQG ASDQYATTVY TSEASGQPST GDYACTAAHN  480
SQEYMYAAAQ AYHQNVTSVY ATPMSLPHPQ RPGEPDCTFY IKTGECSFGA TCKFHHPPDR  540
IPTGIPKPAK NQGLVKLSLA GLPRRETEAP CAYYMKTGAC KFGQTCKYDH PPPQEIIAKA  600
VEQARGEIPV SCDVSMPGSN ESDSQDATPL PPGTDAPAVT AACASST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001766711.12e-92predicted protein, partial
TrEMBLA9SK182e-92A9SK18_PHYPA; Predicted protein (Fragment)
STRINGPP1S135_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-41floral homeotic protein (HUA1)